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Install Request: LAMMPS with Python in version of 7 Feb 2024 or later

Open NicoleLabrAvila opened this issue 1 year ago • 10 comments

Application: LAMMPS with Python in version of 7 Feb 2024 or later

Link: https://docs.lammps.org/Python_install.html

Cluster: Michael

Description: LAMMPS, molecular dynamics solver

License: Open source

Special versions or variants: version of 7 Feb 2024 or later (17 Apr 2024)

Ticket number: IN:00000000

NicoleLabrAvila avatar Jun 19 '24 15:06 NicoleLabrAvila

This one should be done via Spack as LAMMPS was already in the initial list of software we were including. The 20240207.1 version is in Spack 0.22.

heatherkellyucl avatar Jun 19 '24 17:06 heatherkellyucl

This is how we'd install the CPU version: https://github.com/UCL-ARC/hpc-spack/issues/44#issuecomment-2179076165

heatherkellyucl avatar Jun 26 '24 11:06 heatherkellyucl

The old RF ticket for this is IN06678728

balston avatar Aug 28 '24 13:08 balston

I tried emailing the requestor ad this is what was automatically sent back:

This account is scheduled for deletion. It is unlikely that your message will be read.

Oxford University Nexus Email Service

There may be no urgency for this version of LAMMPS at the moment.

balston avatar Aug 28 '24 14:08 balston

The user finally got back to me and has created a ticket:

https://myservices-arc.uk.4me.com/inbox?vstate=assigned_to_my_team&q=&vname=inbox&vlayout=list#id=860392

requesting this version or later on Michael.

balston avatar Dec 19 '24 09:12 balston

I already have a build script for the basic version of 27th June 2024 using the GNU compilers. I'm running this on Michael as this may provide a working version before we deploy our initial SPACK stack on Michael.

balston avatar Dec 19 '24 10:12 balston

LAMMPS has been built and a test job submitted,

balston avatar Dec 19 '24 12:12 balston

the test job didn't work on Michael but does on Myriad so will need to check this after the Christmas and New Year break.

balston avatar Dec 20 '24 17:12 balston

Ticket https://myservices-arc.uk.4me.com/requests/1584885 also needs it!

NicoleLabrAvila avatar Aug 14 '25 14:08 NicoleLabrAvila

The Spack stack (currently deployed on new Kathleen) has lammps/20240829.1-openmpi/gcc-12.3.0 with Python.

Once the Young+Michael stack is built for RHEL9, the intent was to build all the non-Intel parts that will build back on RHEL7 and make it available there on the current clusters.

heatherkellyucl avatar Aug 14 '25 15:08 heatherkellyucl