How can I use geometricus to conduct t-SNE dimensionality reduction for my own pdb files?

[xjhzjucas]

Hi developer, I am a beginner in protein structure study and I read your paper "A structural biology community assessment of AlphaFold2 applications". Thank you for your nice job! I have a question about how to do shape-mer t-SNE dimensionality reduction for my own pdb files, which were developed using AF2. I want to use your method to assess the relationship between my protein structures rather than structures from PDB or AFDB. Can you give me some suggestions? Thank you so much!