caretta

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No superimposed PDB

7

Hi, I am very much interested in using this program in my project. I am trying to align 831 predicted structures, they are well analysed with sequence alignments in previous...

TomDongmin

I am getting the following error while using caretta from the command line (I can provide the list of pdbs to reproduce the error if needed): ``` caretta-cli list_IPR000072_pdbs.dat Found...

anna-pa-m

Would it be possible to include an option to apply rot + trans matrix to original PDB as oppose to the cleaned PDB?

1

This would be useful if you are trying to align structures which contain cofactors, such as ligands.

noahharrison64

Hi, I'm trying caretta for the first time and I ran into an error `AssertionError: Could not understand input caretta_results` using the PDB files obtained from ColabFold as well as...

fjell-dev

and a line that suggests spamming the Enter key instead of mouse clicks for selection

Ninjani

* This could be a JSON/TOML/any kind of key value file, with the default parameters written in it that you pass in to the CLI via `--superpose-parameters`. * Each superposition...

Ninjani

Hi, I keep running into issues because your installer uses an outdated numpy version. Is this an easy fix? All the best, Dan

inthesomeday000