tiatoolbox
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🆕Multichannel Image Reading
Initial draft implementation of multi-channel reading.
Still needs lots of work so its a draft at the moment.
to do:
- [x] test on other examples
- [ ] unit tests
- [ ] decide what should default behaviour be?
- [ ] decide how will interact with VirtualWSIReader mode flag - should we extend this to all readers?
- [ ] are there better ways to do RGB conversion? simple approach at the moment
- [x] Get colors from metadata (if existing)
- [x] Selecting specific channels in viewer
- [x] Third set of metadata format for COMET
- [ ] For usability join the menus for channel and colour (so not scrolling separately)
Codecov Report
:x: Patch coverage is 82.21709% with 77 lines in your changes missing coverage. Please review.
:white_check_mark: Project coverage is 98.51%. Comparing base (3242b1a) to head (165909b).
Additional details and impacted files
@@ Coverage Diff @@
## develop #825 +/- ##
===========================================
- Coverage 99.27% 98.51% -0.77%
===========================================
Files 71 72 +1
Lines 9161 9518 +357
Branches 1195 1265 +70
===========================================
+ Hits 9095 9377 +282
- Misses 40 94 +54
- Partials 26 47 +21
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This PR should be able to read output files from #929