kalign
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TimoLassmann
A fast multiple sequence alignment program.
Hello! Would you be able to add a library and public headers to kalign, so that I can use your aligner from within my cpp project? I'm developing a tool...
Is it possible to use kalign with a custom substitution matrix, with sequences of the custom alphabet?
Hi How many cpus it use? How can we increase number of threads or CPU when using clusters?
Hello again. This is a patch from the Debian package for kalign. It enables building kalign on no-x86 systems using the [SIMD Everywhere](https://github.com/simd-everywhere/simde) header only library.
Hi, I use kalign to perform MSA for DNA sequence. I used the parameter `kalign -i reads.fa -f clu --tgpe 0.01 --gpo 0.2 --gpe 0.4`. The input fasta file is...
Hey! kalign3 prints the log in stdout, which prevents users from redirecting it's output to a command that expects an alignment. One simple solution to this is to print the...
   
Dear Timo I have noticed that with 3.4.0 the `-f clu` output is noticeably different than with the previous version (tested 3.3.1). This breaks our Clustal format parsers and prevents...
For kalign_v3.4.0 I am getting: test.c:14:35: error: ‘KALIGN_PACKAGE_NAME’ undeclared (first use in this function) 14 | fprintf(stdout,"%s %s\n", KALIGN_PACKAGE_NAME, KALIGN_PACKAGE_VERSION);
