TileDB-Py
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TileDB-Inc
Installation fails on python 3.12.0
Trying to install tiledb-py on python 3.12.0 fails:
*[~]$ python -m venv venv312
*[~]$ source venv312/bin/activate
(venv312) *[~]$ python --version
Python 3.12.0
(venv312) *[~]$ python -m pip install tiledb
Collecting tiledb
Downloading tiledb-0.23.4.tar.gz (326 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 326.3/326.3 kB 5.6 MB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
ERROR: Exception:
Traceback (most recent call last):
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
status = run_func(*args)
^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper
return func(self, options, args)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/commands/install.py", line 377, in run
requirement_set = resolver.resolve(
^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve
result = self._result = resolver.resolve(
^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
state = resolution.resolve(requirements, max_rounds=max_rounds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
self._add_to_criteria(self.state.criteria, r, parent=None)
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
if not criterion.candidates:
^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
return bool(self._sequence)
^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
return any(self)
^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
return (c for c in iterator if id(c) not in self._incompatible_ids)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
candidate = func()
^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 211, in _make_candidate_from_link
self._link_candidate_cache[link] = LinkCandidate(
^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
super().__init__(
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
self.dist = self._prepare()
^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
dist = self._prepare_distribution()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/operations/prepare.py", line 525, in prepare_linked_requirement
return self._prepare_linked_requirement(req, parallel_builds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/operations/prepare.py", line 640, in _prepare_linked_requirement
dist = _get_prepared_distribution(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
abstract_dist.prepare_distribution_metadata(
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/distributions/sdist.py", line 54, in prepare_distribution_metadata
self._install_build_reqs(finder)
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/distributions/sdist.py", line 124, in _install_build_reqs
build_reqs = self._get_build_requires_wheel()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/distributions/sdist.py", line 101, in _get_build_requires_wheel
return backend.get_requires_for_build_wheel()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_internal/utils/misc.py", line 751, in get_requires_for_build_wheel
return super().get_requires_for_build_wheel(config_settings=cs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 166, in get_requires_for_build_wheel
return self._call_hook('get_requires_for_build_wheel', {
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 321, in _call_hook
raise BackendUnavailable(data.get('traceback', ''))
pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent call last):
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
obj = import_module(mod_path)
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/endast/.pyenv/versions/3.12.0/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1381, in _gcd_import
File "<frozen importlib._bootstrap>", line 1354, in _find_and_load
File "<frozen importlib._bootstrap>", line 1304, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1381, in _gcd_import
File "<frozen importlib._bootstrap>", line 1354, in _find_and_load
File "<frozen importlib._bootstrap>", line 1325, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 929, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 994, in exec_module
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "/private/var/folders/_z/j3lbpzws61xbd1fpx7h5qlpr0000gq/T/pip-build-env-y86zj0qd/overlay/lib/python3.12/site-packages/setuptools/__init__.py", line 11, in <module>
import distutils.core
ModuleNotFoundError: No module named 'distutils'
The error above is from an M2 mac book pro running macOS 14.1.1.
But it also fails installing into the official python docker image:
Docker
[~]$ docker run --rm python:3.12 python -m pip install tiledb
Unable to find image 'python:3.12' locally
3.12: Pulling from library/python
8024d4fb53b2: Pull complete
3d826ee8aa65: Pull complete
198068495d09: Pull complete
509db9a897ae: Pull complete
8fd6b529c225: Pull complete
113a282385bf: Pull complete
a32c3e5bd8ca: Pull complete
c34a97c23859: Pull complete
Digest: sha256:7b8d65a924f596eb65306214f559253c468336bcae09fd575429774563460caf
Status: Downloaded newer image for python:3.12
Collecting tiledb
Downloading tiledb-0.23.4.tar.gz (326 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 326.3/326.3 kB 5.5 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [33 lines of output]
Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 112, in get_requires_for_build_wheel
backend = _build_backend()
^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
obj = import_module(mod_path)
^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1381, in _gcd_import
File "<frozen importlib._bootstrap>", line 1354, in _find_and_load
File "<frozen importlib._bootstrap>", line 1304, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1381, in _gcd_import
File "<frozen importlib._bootstrap>", line 1354, in _find_and_load
File "<frozen importlib._bootstrap>", line 1325, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 929, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 994, in exec_module
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "/tmp/pip-build-env-z8scafg9/overlay/lib/python3.12/site-packages/setuptools/__init__.py", line 17, in <module>
import setuptools.version
File "/tmp/pip-build-env-z8scafg9/overlay/lib/python3.12/site-packages/setuptools/version.py", line 1, in <module>
import pkg_resources
File "/tmp/pip-build-env-z8scafg9/overlay/lib/python3.12/site-packages/pkg_resources/__init__.py", line 2158, in <module>
register_finder(pkgutil.ImpImporter, find_on_path)
^^^^^^^^^^^^^^^^^^^
AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'?
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
[notice] A new release of pip is available: 23.2.1 -> 23.3.1
[notice] To update, run: pip install --upgrade pip
Hi @endast,
We do not have support for Python 3.12 yet. This is on our future roadmap.
Thanks.
[sc-37726]
There are wheels for Python 3.12 on Windows. Is there a plan to publish Python 3.12 wheels for Linux and macOS (both for x86_64 and arm64/aarch64)? Thanks!
Thanks for the ping @selimnairb. Yes, we'll get those unblocked shortly (only current py312 issue is with Windows CI release builds, which we've worked around locally)
After https://github.com/TileDB-Inc/TileDB-Py/pull/1959, this should be resolved.
