fix: Update CI template "bookdown-production" to be able to success

[MargotBr]

Tech

Replace the template :

image: rocker/verse

variables:
  GIT_DEPTH: 10
  REPO_NAME: "https://packagemanager.rstudio.com/all/__linux__/focal/latest"
  R_LIBS_USER: "ci/lib"

cache:
  key: global-cache
  paths:
      - ${R_LIBS_USER}

stages:
  - book-create
  - deploy

book-branch:
    stage: book-create
    except:
        - main
        - master
        - production
        - merge_requests
    script:
        - lsb_release -c
        - R -e "sessionInfo()"
        - if [[ $CI_DEFAULT_BRANCH == "master" || $CI_DEFAULT_BRANCH = "main" ]]; then echo "OK - Default branch is master or main"; else echo "Default branch is not master or main; please add yours ($CI_DEFAULT_BRANCH) where needed, as well as in the present line of code" ; exit 1; fi
        - echo "Library path for packages :" $R_LIBS_USER
        - mkdir -p $R_LIBS_USER
        - Rscript -e 'install.packages(c("remotes", "attachment", "tinytex", "usethis"))'
        - Rscript -e 'if (!file.exists("DESCRIPTION")) {usethis::use_description()}'
        - >
          Rscript -e 'imports <- unique(c("bookdown", "knitr", "pagedown",
            attachment::att_from_rmds(".", recursive = FALSE)));
            if (packageVersion("attachment") <= "0.2.2") {
              attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports)
              } else {attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports, must.exist = FALSE)}'
        - Rscript -e 'remotes::install_deps(dependencies = TRUE)'
        - Rscript -e 'if(!tinytex::is_tinytex()) tinytex::install_tinytex(force = TRUE)'
        - mkdir -p public
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::gitbook", clean = FALSE, output_dir = "public")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::pdf_book", clean = FALSE, output_dir = "public")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "pagedown::html_paged", clean = FALSE);file.copy("_main.html", "public/_pagedown.html")'
    artifacts:
        paths:
            - public
        expire_in: 30 days
        
        
book-main:
    stage: book-create
    only:
        - master
        - main
        - merge_requests
    script:
        - echo "Library path for packages :" $R_LIBS_USER
        - mkdir -p $R_LIBS_USER
        - Rscript -e 'install.packages(c("remotes", "attachment", "tinytex", "usethis"))'
        - Rscript -e 'if (!file.exists("DESCRIPTION")) {usethis::use_description()}'
        - >
          Rscript -e 'imports <- unique(c("bookdown", "knitr", "pagedown",
            attachment::att_from_rmds(".", recursive = FALSE)));
            if (packageVersion("attachment") <= "0.2.2") {
              attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports)
              } else {attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports, must.exist = FALSE)}'
        - Rscript -e 'remotes::install_deps(dependencies = TRUE)'
        - Rscript -e 'if(!tinytex::is_tinytex()) tinytex::install_tinytex(force = TRUE)'
        - mkdir -p public
        - 'curl --location --output artifacts.zip --header "JOB-TOKEN: $CI_JOB_TOKEN" "$CI_API_V4_URL/projects/$CI_PROJECT_ID/jobs/artifacts/production/download?job=pages" &&
          unzip artifacts.zip &&
          rm artifacts.zip &&
          echo "copied production artifacts" ||
          echo "copied production artifacts failed"'
        - Rscript -e 'file.remove(list.files("public", full.names = TRUE))'
        - Rscript -e 'unlink("public/libs", recursive = TRUE);unlink("public/images", recursive = TRUE)'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::gitbook", clean = FALSE, output_dir = "public")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::pdf_book", clean = FALSE, output_dir = "public")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "pagedown::html_paged", clean = FALSE);file.copy("_main.html", "public/_pagedown.html")'
    artifacts:
        paths:
            - public
        expire_in: 30 days

book-production:
    stage: book-create
    only:
        - production
    script:
        - echo "Library path for packages :" $R_LIBS_USER
        - mkdir -p $R_LIBS_USER
        - Rscript -e 'install.packages(c("remotes", "attachment", "tinytex", "usethis"))'
        - Rscript -e 'if (!file.exists("DESCRIPTION")) {usethis::use_description()}'
        - >
          Rscript -e 'imports <- unique(c("bookdown", "knitr", "pagedown",
            attachment::att_from_rmds(".", recursive = FALSE)));
            if (packageVersion("attachment") <= "0.2.2") {
              attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports)
              } else {attachment::att_to_desc_from_is(path.d = "DESCRIPTION", imports = imports, must.exist = FALSE)}'
        - Rscript -e 'remotes::install_deps(dependencies = TRUE)'
        - Rscript -e 'if(!tinytex::is_tinytex()) tinytex::install_tinytex(force = TRUE)'
        - mkdir -p public
        - 'curl --location --output artifacts.zip --header "JOB-TOKEN: $CI_JOB_TOKEN" "$CI_API_V4_URL/projects/$CI_PROJECT_ID/jobs/artifacts/$CI_DEFAULT_BRANCH/download?job=pages" &&
          unzip artifacts.zip &&
          rm artifacts.zip &&
          echo "copied $CI_DEFAULT_BRANCH artifacts" ||
          echo "copied $CI_DEFAULT_BRANCH artifacts failed"'
        # Clean production directory
        - Rscript -e 'unlink("public/production", recursive = TRUE)'
        - mkdir -p public/production
        # Keep clean to FALSE to retrieve intermediate files in case something fails
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::gitbook", clean = FALSE, output_dir = "public/production")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "bookdown::pdf_book", clean = FALSE, output_dir = "public/production")'
        - Rscript -e 'bookdown::render_book("index.Rmd", output_format = "pagedown::html_paged", clean = FALSE);file.copy("_main.html", "public/production/_pagedown.html")'
    artifacts:
        paths:
            - public/production
        expire_in: 30 days

pages:
    stage: deploy
    script:
        - echo "book deployment"
    artifacts:
        paths:
            - public
    only:
        - main
        - master

pages:
    stage: deploy
    script:
        - echo "book deployment"
    artifacts:
        paths:
            - public/production
    only:
        - production