cellphonedb
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Teichlab
Hi team, Great work. I applied CellPhoneDB V2 on my dataset and got very meaningful result. Just one thing has puzzled me for a long time. In the Dot Plot,...
Hi, I am trying to run Cellphonedb v3 as below but encounter unexpected error. Do you know how to fix this error? Thanks!
hi,I got the following error when using cellphonedb, I would like to ask for a solution, thank you very much！ (base) ringo@ubuntu:~$ cellphonedb method statistical_analysis cellphonedb_meta.txt cellphonedb_count.txt --counts-data=gene_name --subsampling --subsampling-log...
Hello, I am grateful that you can develop this excellent software for us, this is a problem when I used it. I found that the output file named "pvalues.txt" has...
Hello, I'm attempting to run ```cellphonedb database generate``` using my own user curated interactions however I'm encountering the following error: ```Traceback (most recent call last): File "/home/nt2473/miniconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1257, in...
Hi, I'm using cellphonedb database generate --user-interactions my_interaction.txt to generate a custom database. There are some complex in my own interaction file. But I encountered difficulty. For example, S100A8 and...
Hey all, I am running this code: `cellphonedb plot dot_plot --means-path /home/schweir3/CellphoneDB/Results/means.txt --pvalues-path /home/schweir3/CellphoneDB/Results/pvalues.txt --output-path /home/schweir3/CellphoneDB/Results ` And I am getting this error message: ``` R[write to console]: Error in...
Hi all, I met a strange problem which never exists before. Every time I run `cellphonedb plot heatmap_plot`, I'll get errors like this ``` Warning message: In options(stringsAsFactors = TRUE)...
I want to use custom interaction pairs. But when I use this command, there is a error: command: cellphonedb database generate --user-interactions test.csv --user-interactions-only error:  The content of text.csv...
Dears, I have encountered a problem when using self-generated database. The errors seems like this :  Is anyone have any idea of what's going on and how to solve...
