bbknn

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incompatible with annoy==1.17.0 ?

2

I was trying to run bbknn (and also scrublet) and both independently kept crashing my sessions. I think it's got to do with `annoy==1.17.0` and simply downgrading to `annoy==1.16.3` made...

zktuong

BBKNN incompatible with 'x86_64', need 'arm64e'

3

Is bbknn not able to work on the new mac chips? I get the following error: mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64e'))

Shaun-Regenbaum

ValueError: No hyperplanes of adequate size were found! When not using annoy

5

Hi there, Having an issue when I try to run BBKNN without annoy. Had this error, then freshly installed everything in a new conda environment, I'm still getting the error...

mtvector

Add cosine distance as valid metric

4

Hello, When running this tool recently, I get errors with "angular" not being a valid metric anymore. It seems this is replaced with "cosine" in both Scipy and Scikit-learn, so...

olgabot

olgabot

Adds [black](https://black.readthedocs.io/en/stable/) formatting to the code for easy reading

olgabot

Hi @Teichlab, I want to use bbknn in R. But an error come out as follow: ` > bbknn = import(module = 'bbknn') > sc = import("scanpy",convert=FALSE) > np =...

Zhaohui-Ruan

BBKNN for ATAC data

1

Hi! Thank you for the awesome package :) I was wondering if it is possible to use other dimensionality reduction methods than PCA for `bbknn.bbknn`, such as LSI which is...

wlason

Reproducibility of BBKNN results

2

Hi there, Thank you very much for developing this wonderful tool for data integration. However, I have encountered some reproducibility issues in my analysis and would really appreciate your suggestions....

liangyf24

Custom function does not work

1

Dear developer, can you help me to find what is the issue behind this aspect? bbknn should accept a custom distance metric but it provides a warning and returns to...

LucaGiudice