NetworkInference.jl
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Tchanders
Methods for inferring undirected networks from data
Hello BEELINE developers, Thanks for this valuable project! I am trying to run the different methods on the data, but I have faced issues with PIDC method. I pulled PIDC...
I am running PIDC using the [BEELINE](https://github.com/Murali-group/Beeline) pipeline (Julia v1.1.0). I get the following error when a gene is zero-expressed for every cell: ``` 6d6612190f7e:/data grnbeeline/pidc:base /bin/sh -c "time -v...
I thought it would be useful to be able to create a network only for certain target genes, so that instead of calculating the PID for all triangles, in only...
Hi, Thanks a for building this tool, it is really helpful! I got an error as > ArgumentError: indexed assignment with a single value to many locations is not supported;...
When running PIDC on a large dataset of 5000+ genes, I'm getting a `signal (7): Bus error` from Linux similar to the one reported [here](https://github.com/JuliaLang/julia/issues/26222). Do you know if there's...
Hello! I'm not very familiar with Julia, and I wonder after I get the inferred_network object, instead of obtaining the adjacency matrix with different thresholds, is there a way to...
Hi, I am running `infer_network( "../expression.tsv", out_file_path="../net.tsv", PIDCNetworkInference())` where `expression.tsv` is a (3000, 497) matrix without header but with gene as index. I get this error as in the title....
