scMerge

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using scMerge2 with count matrix Seurat object

1

Hello everyone! I would like to integrate 2 datasets of single cell using scMerge2. I have the two rds objects, coming from Seurat, containing the counts matrices for each dataset...

martina811

how to accelarate the scMerge2 process

3

I use scMerge2 to integrate about 150K cells. Now, it costed about 5 hours and still run the "Running RUV" step with 120 CPU. I wonder how to accelarate the...

xflicsu

hi, when running scMerge2() I get an error: `Error in (function (A, nv = 5, nu = nv, maxit = 1000, work = nv + 7, reorth = TRUE, :...

satzel

getting Error in pca_current[, seq_len(10)] : subscript out of bounds

1

Hi, I am trying to integrate two PBMC batches (control and stimulation) but keep getting the same error. And example of what I am trying to do is: `library(Seurat) library(SeuratData)...

MartinLoza

Feature request: Interactive plotting function

1

Use the ggiraph package.

kevinwang09