What python version did you guys use for this project?

Open ShaysFrame opened this issue 1 year ago • 1 comments

Using your script it seems that I can't install the following torch version that's been specified with cpu tag pip install torch==1.11.0+cpu torchvision==0.12.0+cpu torchaudio==0.11.0 --extra-index-url https://download.pytorch.org/whl/cpu

but if I change it to: pip install torch==1.11.0 torchvision==0.12.0 torchaudio==0.11.0 --extra-index-url https://download.pytorch.org/whl/cpu

Then it's okay.

The pip list:

$ pip list Package Version

certifi 2022.12.7 charset-normalizer 3.4.1 clang 6.0.0.2 idna 3.10 Jinja2 3.1.5 joblib 1.3.2 MarkupSafe 2.1.5 numpy 1.21.6 pandas 1.3.5 Pillow 9.5.0 pip 22.3.1 psutil 6.1.1 pyparsing 3.1.4 python-dateutil 2.9.0.post0 pytz 2024.2 requests 2.31.0 scikit-learn 1.0.2 scipy 1.7.3 setuptools 65.6.3 six 1.17.0 threadpoolctl 3.1.0 torch 1.11.0 torch-cluster 1.6.1 torch-geometric 2.3.1 torch-scatter 2.1.1 torch-sparse 0.6.17 torch-spline-conv 1.2.2 torchaudio 0.11.0 torchvision 0.12.0 tqdm 4.67.1 typing_extensions 4.7.1 urllib3 2.0.7 wheel 0.38.4

And the error I get on the last stage.

$ python3 test.py Traceback (most recent call last): File "test.py", line 6, in from torch_geometric.data import Data File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/init.py", line 1, in import torch_geometric.utils File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/utils/init.py", line 3, in from .scatter import scatter File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/utils/scatter.py", line 7, in import torch_geometric.typing File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/typing.py", line 37, in import torch_sparse # noqa File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/init.py", line 40, in from .tensor import SparseTensor # noqa File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/tensor.py", line 13, in class SparseTensor(object): File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch/jit/_script.py", line 1302, in script _compile_and_register_class(obj, _rcb, qualified_name) File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch/jit/_recursive.py", line 44, in _compile_and_register_class script_class = torch._C._jit_script_class_compile(qualified_name, ast, defaults, rcb) RuntimeError: object has no attribute sparse_csc_tensor: File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/tensor.py", line 520 value = torch.ones(self.nnz(), dtype=dtype, device=self.device())

    return torch.sparse_csc_tensor(colptr, row, value, self.sizes())
           ~~~~~~~~~~~~~~~~~~~~~~~ <--- HERE

I tried using different python versions such as python 3.8,9,10 and I get new different erros! for example 3.10 gives me error

$ python3 test.py /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:86: UserWarning: An issue occurred while importing 'torch-scatter'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_scatter/_version_cpu.so) warnings.warn(f"An issue occurred while importing 'torch-scatter'. " /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:97: UserWarning: An issue occurred while importing 'torch-cluster'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_cluster/_version_cpu.so) warnings.warn(f"An issue occurred while importing 'torch-cluster'. " /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:113: UserWarning: An issue occurred while importing 'torch-spline-conv'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_spline_conv/_version_cpu.so) warnings.warn( /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:124: UserWarning: An issue occurred while importing 'torch-sparse'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_sparse/_version_cpu.so) warnings.warn(f"An issue occurred while importing 'torch-sparse'. " Traceback (most recent call last): File "/home/parallels/researchfolder/GraphSPD/test.py", line 6, in from torch_geometric.data import Data File "/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/init.py", line 8, in from .index import Index File "/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/index.py", line 461, in @implements(aten.clone.default) AttributeError: 'builtin_function_or_method' object has no attribute 'default'

So at this point I'm doubting maybe it's because of the modified line I've done in the script which is as follows:

sudo ln -s /usr/lib/aarch64-linux-gnu/libclang-*.so.1 /usr/lib/aarch64-linux-gnu/libclang.so

since i'm on arm based mac needed to modify the link...

but what's this mess.... @ . @

Dec 28 '24 08:12 ShaysFrame

also now getting another issue which is

(gspd) shay@Shays-Mackbook GraphSPD % python3 test.py zsh: segmentation fault python3 test.py

Dec 28 '24 12:12 ShaysFrame