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Published 3 months ago • verified publisher icon StatFunGen

RNA_calling.ipynb rsem_call error when using BAM files from STAR with wasp filter

Open grennfp opened this issue 2 years ago • 1 comments

Running alignment with the STAR wasp option creates *toTranscriptome.out_wasp_qc.bam files. When running RSEM, the code expect the files to not include "_wasp_qc" in the name, causing an error.

grennfp avatar Oct 05 '23 18:10 grennfp

@grennfp is this fixed now? It looks like a file naming issue that can be addressed with a bit of SoS/python syntax?

gaow avatar Feb 26 '24 15:02 gaow