cellcall

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[bug] Error when creating object with Full-length df

3

Hi, I tried to create an object using this command `CreateNichConObject(data = reads_df, min.feature = 500, source = "fullLength", Org = "Mus musculus", names.delim = "M", names.field = 1)` as...

PerrineLacour

could this software be used to compare two or more treatment?

2

hello, thanks a lot. I want to use this software to compare the difference between the two treatments, could you add the solutions? @ShellyCoder

Baoquan-Han

Receptor complex information missing from mouse dataset

1

Hi, I wanted to use your package with mouse dataset, but I saw that there is no receptor complex in the mouse triple relation table, whereas there are in the...

PerrineLacour

Can you use CellCall with mouse datasets?

1

Hi there, can you use cellcall with mouse datasets at all? cheers Rachel

rachel662

Questions about LR2TF function

1

Hi, Shelly, thanks for your excellent package. Recently, when I performed the "LR2TF" function between some sender cells and receiver cells, an error occurred "Error in my_ligand_receptor_df[n, 1] : Subscript...

anchormok

A problem when using "CreateObject_fromSeurat()"

1

Thanks for developing this user-friendly tools! I am using cellcall through seurat object and I think that I met some slight errors. 1. User can not define project name. This...

ylxie21

Seurat rds input

1

Is it possible to import a Seurat object (filtered) for cellcall downstream analyses? Thanks!

strawberry789

XjtuZhangKun-lab

Hi there, When we have run through the TransCommuProfile fucntion to generate L-R interaction score, how can we select specific cell sender and receiver in the ViewInterCircos function? Just as...

helnSYSUCC

Thanks for your remarkable work! I am quite confused about the dataset for ligand-receptor-transcription factor. The number of ligand-receptor-TF in the “new_ligand_receptor_TFs_homology_extended.txt” file is 3457, while the number of ligand-receptor-TF...

GLORIA129