[bug] 16 unit tests fail on main with custom install
🐞 Describe the Bug
The following tests fail on main branch
FAILED tests/data/test_sampling.py::test_gpt_sample[full-0] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[full-32] - AssertionError: 1 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[full-88] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-0] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-32] - AssertionError: 1 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-88] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-0] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-32] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-88] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-0] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-32] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-88] - AssertionError: 4 != 6
FAILED tests/test_match_megatron.py::test_gpt2_meg - RuntimeError: Process failed with return code 1
FAILED tests/test_match_megatron.py::test_mistral_meg - RuntimeError: Process failed with return code 1
FAILED tests/test_match_megatron.py::test_mixtral_meg - RuntimeError: Process failed with return code 1
FAILED tests/test_simple.py::test_model - RuntimeError: DataLoader worker (pid(s) 16376) exited unexpectedly
🔄 Steps to Reproduce
Steps to reproduce the behavior:
-
commit id
fae01025acf59275d215c5d0fea821c484083889 -
Run from research interactive job:
registry.toolkit-sp.yul201.service-now.com/snow.shared/interactive-toolkit:latest -
conda environment
pip freeze:aiohappyeyeballs==2.4.6 aiohttp==3.11.13 aiosignal==1.3.2 annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 apex @ file:///home/toolkit/code/apex asttokens @ file:///home/conda/feedstock_root/build_artifacts/asttokens_1733250440834/work attrs==25.1.0 Brotli @ file:///croot/brotli-split_1736182456865/work certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1739515848642/work/certifi cfgv==3.4.0 charset-normalizer @ file:///croot/charset-normalizer_1721748349566/work click==8.1.8 colorama==0.4.6 comm @ file:///home/conda/feedstock_root/build_artifacts/comm_1733502965406/work datasets==3.3.2 debugpy @ file:///croot/debugpy_1736267418885/work decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1740384970518/work dill==0.3.8 distlib==0.3.9 docker-pycreds==0.4.0 einops==0.8.1 exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1733208806608/work executing @ file:///home/conda/feedstock_root/build_artifacts/executing_1733569351617/work -e git+ssh://[email protected]/ServiceNow/Fast-LLM.git@fae01025acf59275d215c5d0fea821c484083889#egg=fast_llm filelock @ file:///work/perseverance-python-buildout/croot/filelock_1701733993137/work flash-attn==2.7.2.post1 frozenlist==1.5.0 fsspec==2024.12.0 future-fstrings==1.2.0 gitdb==4.0.12 GitPython==3.1.44 gmpy2 @ file:///croot/gmpy2_1738085463648/work hf_transfer==0.1.9 huggingface-hub==0.29.1 hydra-core==1.3.2 identify==2.6.8 idna==3.10 importlib_metadata @ file:///home/conda/feedstock_root/build_artifacts/importlib-metadata_1737420181517/work iniconfig==2.0.0 ipykernel @ file:///home/conda/feedstock_root/build_artifacts/ipykernel_1719845459717/work ipython @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_ipython_1741457126/work ipython_pygments_lexers @ file:///home/conda/feedstock_root/build_artifacts/ipython_pygments_lexers_1737123620466/work jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1733300866624/work Jinja2 @ file:///croot/jinja2_1737760107953/work jupyter_client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1733440914442/work jupyter_core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_core_1727163409502/work MarkupSafe @ file:///croot/markupsafe_1738584038848/work matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1733416936468/work mkl-service==2.4.0 mkl_fft @ file:///io/mkl313/mkl_fft_1730824109137/work mkl_random @ file:///io/mkl313/mkl_random_1730823916628/work mpmath @ file:///work/perseverance-python-buildout/croot/mpmath_1698864994882/work multidict==6.1.0 multiprocess==0.70.16 nest_asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1733325553580/work networkx @ file:///croot/networkx_1737039604450/work nodeenv==1.9.1 numpy==1.26.4 nvidia-cublas-cu12==12.4.5.8 nvidia-cuda-cupti-cu12==12.4.127 nvidia-cuda-nvrtc-cu12==12.4.127 nvidia-cuda-runtime-cu12==12.4.127 nvidia-cudnn-cu12==9.1.0.70 nvidia-cufft-cu12==11.2.1.3 nvidia-curand-cu12==10.3.5.147 nvidia-cusolver-cu12==11.6.1.9 nvidia-cusparse-cu12==12.3.1.170 nvidia-cusparselt-cu12==0.6.2 nvidia-nccl-cu12==2.21.5 nvidia-nvjitlink-cu12==12.4.127 nvidia-nvtx-cu12==12.4.127 omegaconf==2.3.0 packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1733203243479/work pandas==2.2.3 parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1733271261340/work pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1733301927746/work pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1733327343728/work pillow @ file:///croot/pillow_1738010226202/work platformdirs @ file:///home/conda/feedstock_root/build_artifacts/platformdirs_1733232627818/work pluggy==1.5.0 pre_commit==4.1.0 prompt_toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1737453357274/work propcache==0.3.0 protobuf==5.29.3 psutil @ file:///croot/psutil_1736367091698/work ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1733302279685/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl#sha256=92c32ff62b5fd8cf325bec5ab90d7be3d2a8ca8c8a3813ff487a8d2002630d1f pure_eval @ file:///home/conda/feedstock_root/build_artifacts/pure_eval_1733569405015/work pyarrow==19.0.1 pybind11==2.13.6 pydantic==2.10.6 pydantic_core==2.27.2 Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1736243443484/work PySocks @ file:///work/perseverance-python-buildout/croot/pysocks_1698845478203/work pytest==8.3.4 pytest-depends==1.0.1 python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1733215673016/work pytz==2025.1 PyYAML @ file:///croot/pyyaml_1728657952215/work pyzmq @ file:///croot/pyzmq_1734687138743/work regex==2024.11.6 requests @ file:///croot/requests_1730999120400/work safetensors==0.5.3 sentry-sdk==2.22.0 setproctitle==1.3.5 setuptools==75.8.0 six @ file:///home/conda/feedstock_root/build_artifacts/six_1733380938961/work smmap==5.0.2 stack_data @ file:///home/conda/feedstock_root/build_artifacts/stack_data_1733569443808/work sympy==1.13.1 tokenizers==0.21.0 torch==2.5.1 torchaudio==2.5.1 torchvision==0.20.1 tornado @ file:///croot/tornado_1733960490606/work tqdm==4.67.1 traitlets @ file:///home/conda/feedstock_root/build_artifacts/traitlets_1733367359838/work transformers==4.49.0 triton==3.1.0 typing_extensions @ file:///croot/typing_extensions_1734714854207/work tzdata==2025.1 urllib3 @ file:///croot/urllib3_1737133630106/work virtualenv==20.29.2 wandb==0.19.7 wcwidth @ file:///home/conda/feedstock_root/build_artifacts/wcwidth_1733231326287/work wheel==0.45.1 xxhash==3.5.0 yarl==1.18.3 zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1732827521216/work -
run
pytest tests
🎯 Expected Behavior
pass all the tests
📜 Environment Information
Run the following script in your environment and paste its output here:
=== SYSTEM INFORMATION ===
Operating System:
Linux 322263a3-2a65-48b1-ab24-68fe587efa77 5.15.0-1067-nvidia #68-Ubuntu SMP Mon Oct 7 14:34:20 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
CPU Information:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 52 bits physical, 57 bits virtual
Byte Order: Little Endian
CPU(s): 224
On-line CPU(s) list: 0-223
Vendor ID: GenuineIntel
Model name: Intel(R) Xeon(R) Platinum 8480C
CPU family: 6
Model: 143
Thread(s) per core: 2
Core(s) per socket: 56
Socket(s): 2
Stepping: 8
CPU(s) scaling MHz: 96%
CPU max MHz: 3800.0000
CPU min MHz: 800.0000
BogoMIPS: 4000.00
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfm
perf tsc_known_freq pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_
l3 cat_l2 cdp_l3 invpcid_single intel_ppin cdp_l2 ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm rdt_a avx512f avx512dq rdseed adx smap avx512
ifma clflushopt clwb intel_pt avx512cd sha_ni avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local split_lock_detect avx_vnni avx512_bf16 wbnoinvd dtherm ida arat pln pts hwp hwp_act_window
hwp_epp hwp_pkg_req avx512vbmi umip pku ospke waitpkg avx512_vbmi2 gfni vaes vpclmulqdq avx512_vnni avx512_bitalg tme avx512_vpopcntdq la57 rdpid bus_lock_detect cldemote movdiri movdir64b enqcmd fsrm md_clear serialize tsxldtrk pconfig
arch_lbr amx_bf16 avx512_fp16 amx_tile amx_int8 flush_l1d arch_capabilities
Virtualization features:
Virtualization: VT-x
Caches (sum of all):
L1d: 5.3 MiB (112 instances)
L1i: 3.5 MiB (112 instances)
L2: 224 MiB (112 instances)
L3: 210 MiB (2 instances)
NUMA:
NUMA node(s): 2
NUMA node0 CPU(s): 0-55,112-167
NUMA node1 CPU(s): 56-111,168-223
Vulnerabilities:
Gather data sampling: Not affected
Itlb multihit: Not affected
L1tf: Not affected
Mds: Not affected
Meltdown: Not affected
Mmio stale data: Not affected
Reg file data sampling: Not affected
Retbleed: Not affected
Spec rstack overflow: Not affected
Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl and seccomp
Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Spectre v2: Mitigation; Enhanced / Automatic IBRS; IBPB conditional; RSB filling; PBRSB-eIBRS SW sequence; BHI BHI_DIS_S
Srbds: Not affected
Tsx async abort: Not affected
Memory Information:
total used free shared buff/cache available
Mem: 2.0Ti 120Gi 273Gi 361Mi 1.6Ti 1.9Ti
Swap: 0B 0B 0B
=== GPU INFORMATION ===
NVIDIA System Management Interface (nvidia-smi):
Thu Mar 20 20:59:01 2025
+-----------------------------------------------------------------------------------------+
| NVIDIA-SMI 550.127.05 Driver Version: 550.127.05 CUDA Version: 12.8 |
|-----------------------------------------+------------------------+----------------------+
| GPU Name Persistence-M | Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap | Memory-Usage | GPU-Util Compute M. |
| | | MIG M. |
|=========================================+========================+======================|
| 0 NVIDIA H100 80GB HBM3 On | 00000000:52:00.0 Off | 0 |
| N/A 32C P0 69W / 700W | 1MiB / 81559MiB | 0% Default |
| | | Disabled |
+-----------------------------------------+------------------------+----------------------+
+-----------------------------------------------------------------------------------------+
| Processes: |
| GPU GI CI PID Type Process name GPU Memory |
| ID ID Usage |
|=========================================================================================|
| No running processes found |
+-----------------------------------------------------------------------------------------+
CUDA Version:
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2025 NVIDIA Corporation
Built on Wed_Jan_15_19:20:09_PST_2025
Cuda compilation tools, release 12.8, V12.8.61
Build cuda_12.8.r12.8/compiler.35404655_0
=== PYTHON AND TORCH INFORMATION ===
Python Version:
Python 3.12.9
Torch Version:
2.5.1
CUDA Available (in Torch):
True
CUDA Version (in Torch):
12.1
NCCL Version (in Torch):
(2, 21, 5)
=== FLASH ATTENTION INFORMATION ===
Flash Attention Version:
2.7.2.post1
=== APEX INFORMATION ===
APEX Version:
APEX version not specified
=== END OF ENVIRONMENT INFORMATION ===
📝 Additional Context
full output of the tests attached
I'm not sure about the sampling errors, but test_match_megatron and test_model point to environment issues (missing transformer engine, problem with numpy). You're using a custom fast-llm installation right? Any reason for not using the official Fast-LLM image?
Concerning the data thing, one possibility is that the test cache got corrupted, try rm -r/tmp/fast_llm_tests first (it this a long-lived job?)
Unfortunately, clearing the test cache did not help, and the same tests are still failing.
Regarding why I’m not using the official image—I am using the interactive job as a workstation and working within it. In my workflow, it is easier to create a Python environment with the required dependencies and run tests there. This allows me to use all my usual tools, such as remote Visual Studio Code, to make real-time code changes and debug the code.
I believe I’m not the only one using this workflow instead of the official image for library development. So, it would be helpful to have instructions on how to install the correct versions of dependencies, such as the mentioned NumPy and Transformer Engine.
Though we do not need to support custom installations for deployment.
Thanks.
@jlamypoirier if this is truly due to missing dependencies then why aren't these specified as such in setup.cfg?
@bigximik can you try https://github.com/NVIDIA/TransformerEngine?tab=readme-ov-file#pip please?
Installing transformer engine solved 3 out of 16 failed tests but sampling and simple tests (data loader failing) still fail:
FAILED tests/data/test_sampling.py::test_gpt_sample[full-0] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[full-32] - AssertionError: 1 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[full-88] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-0] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-32] - AssertionError: 1 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[epoch-88] - AssertionError: 3 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-0] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-32] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[skip_first_epoch-88] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-0] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-32] - AssertionError: 4 != 6
FAILED tests/data/test_sampling.py::test_gpt_sample[disabled-88] - AssertionError: 4 != 6
FAILED tests/test_simple.py::test_model - RuntimeError: DataLoader worker (pid(s) 21518, 21519) exited unexpectedly
@bigximik Is this still happening?