sccaf
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SCCAF
Single-Cell Clustering Assessment Framework
Thanks.. I am using this module for my analysis but it uses scanpy==1.4.6 if i use upgraded version of scanpy this program fails. can you please update this scanpy version...
Thank you for your cool package. I've been experimenting with it on my own data lately. The issue that arose after installing it (from PyPI) is that the 'scanpy==1.4.6' dependency...
After I installed the SCCAF, I got an error as follows: from SCCAF import * --------------------------------------------------------------------------- NameError Traceback (most recent call last) in ----> 1 from SCCAF import * /opt/anaconda3/lib/python3.8/site-packages/SCCAF/__init__.py...
Hi, I have converted my Seurat object integrated assay using SeuratDisk to anndata format, and want to run SCCAF. Data is loaded with no error using sc.read. However, when I...
…in Louvain clustering being run ignoring options --slot-for-existing-clustering and --external-clustering-tsv.
ad.write(filename='ab.h5') I used SCCAF but find this problem ,can you help me? thank you OSError Traceback (most recent call last) d:\program files\python37\lib\site-packages\anndata\_io\utils.py in func_wrapper(elem, key, val, *args, **kwargs) 187 try:...
I was wondering how can I collect and plot the accuracies results of all rounds after I successfully run the `SCCAF_optimize_all` function? I like the plot shown by the cli...
Hello, I have problem when SCCAF is installed using conda. conda install SCCAF seem successful but Im getting error when importing SCCAF in python: `>>> import SCCAF /home/ubuntu/miniconda3/envs/python_env/lib/python3.7/site-packages/anndata/_core/anndata.py:21: FutureWarning: pandas.core.index...
Hi, I'm new in the field so I may, so I do apologize for errors I may have committed. My problem is that when I perform the cluster analysis step...
