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using identify_cdr_cluster with pyigclassify2

Open croshong opened this issue 3 months ago • 0 comments

Hi all

I'm now trying to label CDR in my antibody structure using identify_cdr_cluster command in rosetta

I heard that Pyigclassify2 database can be used in rosetta and to use Pyigclassify2 DB

just download pyigclassify2 DB and put all of them in rosetta/main/database/sampling/antibodies. but even after I download and put pyigclassify2 DB into rosetta/main/database/sampling/antibodies,

identify_cdr_cluster used rosetta/main/database/sampling/antibodies/cluster_center_dihedrals.txt which was used without pyigclassify2 DB

the downloaded pyigclassify2 DB is like below

pyig_ab_mmcif.tar.gz pyig_cluster_mmcif.tar.gz pyig_domain.fasta pyig_readme.txt pyig_cdr_data.txt.gz pyig_domain_data.txt.gz pyig_mmcif.tar.gz

to use pyigclassify2 in rosetta, should I do some kind of editing of this file ?

or is there any other thing that I miss ?

Thanks in advance

reagards

croshong

croshong avatar Oct 28 '25 12:10 croshong