RoseTTAFold
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RosettaCommons
This package contains deep learning models and related scripts for RoseTTAFold
Does anyone know if there is a way of going from having a file containing unit cells + atoms to a folded protein structure via Rosetta? I am following the...
Hello, Is it possible to use the MSAs generated by AlphaFold, converted as .a3m format, for multi-chain predictions? Regards
Hello Rosetta community! I'd like to ask whether it is safe to run RoseTTAFold on Linux ARM64 machines ? Does anyone have positive experience with it ? I am talking...
Dear RoseTTAFold Team, Hi, I'm a user! I tried to predict a large protein (>2500 amino acids) using RoseTTAFold in Linux server. But, I got this message. [log/make_msa.stderr] ``` ...skipping......
Changes the cache directory path from the installation directory to the users home directory to avoid a crash due to insufficient permissions. Should fix #120
run_e2e_ver.sh is trying to create cache directory in the RRoseTTAFold install directory. This is not possible on a shared system (HPC). I wonder how others are able to do run...
Hi, When I try to extract pdb100 with 'tar xfz pdb100_2021Mar03.tar.gz', I encountered the following error: tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now I tried...
Hi. While running the following command for complex modeling, **python network/predict_complex.py -i filtered.a3m -o complex -Ls 218 310** The message comes as: **Using backend: pytorch ERROR: failed to load model**...
Dear all, I want to try if RoseTTAFold can well predict the protein complex such as virus-host interactions. So I used the protein sequences of SARS-CoV-2 RBD and human ACE2...
Would be great to have a Colab Notebook of RoseTTAFold similar to Deepmind's Colab were they allow user to input a sequence string and get the prediction.
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This package contains deep learning models and related scripts for RoseTTAFold