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Contigmap in Motif Scaffolding

Open plvdac1 opened this issue 2 years ago • 5 comments

Hi everyone,

is it possible to specify multiple contigs like: 'contigmap.contigs=[12-20/B14-16/1-5/B18-20/1-5]' when scaffolding a motif? I have an active site which is made by non continous amino acids and I'm trying to fix those residues and diffuse the other. From the instructions seems possible, but I get the following error. Any help is very much appreciated:

_File "/home/shared/RFdiffusion/rfdiffusion/contigs.py", line 258, in expand_sampled_mask int(subcon.split("-")[1]) + 1, IndexError: list index out of range

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace._

Thanks a lot! ~

plvdac1 avatar Jul 26 '23 15:07 plvdac1

^^ also having this issue

h-s-miller avatar Oct 13 '23 19:10 h-s-miller

Hi, plvdac1, I have the same issue now, Could you share your solutions here if you have fixed it? Thanks!

Lyn-666 avatar Oct 31 '23 22:10 Lyn-666