RFdiffusion
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RosettaCommons
Code for running RFdiffusion
So, I have an example **protein A** that is very similar to my **protein B** I aim to study. The **protein A** has a binder **A-binder**, and I use **A-binder**...
Hi, amazing repo! Will icosahedral symmetric design (as mentioned in the preprint) also be made available on GitHub? Thanks!
i tried to do so   but it doesn't work
I have installed RFdiffusion in conda. I followed the instructions in the README. However, I got stuck at one specific step: `conda env create -f env/SE3nv.yml` The problem was that...
Hi - I am trying to build some structural elements around a scaffold (1wj2.pdb, A430-466). Currently, I've been playing around with some options, but I am getting a random error...
In addition to the general contig specification which is being used for the generation, it would also be helpful to monitor what the actual randomly sampled contig is. I believe...
When I try running the program, I get the error: /mnt/nfs/clustersw/Debian/bookworm/RFdiffusion/20240307/lib/python3.11/site-packages/rfdiffusion/util.py:253: UserWarning: Using torch.cross without specifying the dim arg is deprecated. Please either pass the dim explicitly or simply use...
Hi, all. I just find I cannot access http://files.ipd.uw.edu/pub/RFdiffusion/... to download weights. I tried wget download and website download by http://files.ipd.uw.edu/pub/RFdiffusion/..., however, none of both work. I had accessed them...
when i installed model with "pip install -e . ", i got this error: ERROR: Could not find a version that satisfies the requirement se3-transformer (from rfdiffusion) (from versions: none)...
