IndexError in Notebook 06.07 - Denovo Protein Design

[konradpaszkiewicz]

Hi team,

Thanks for a great resource. I've been struggling for a few days to troubleshoot this issue. I'm getting a very cryptic index error when trying to run the redesign Chain A in this notebook.

I have tried running with 2022 (python 3.9) and 2019 (python 3.6) releases of PyRosetta installed via conda, but the error persists.

I'd be grateful for any suggestions.

All the best,

Konrad.

Denovo Protein Design Notebook Output.pdf

[hklz]

Hi Konrad,

I meet the same error. Do you have any idea?

Thank you!

[hklz]

I think is the virtual root problem. I comment out the virtual_root.apply(pose) in design part, and change the pose_chBC.chain_end(3)-1 part to pose_chBC.chain_end(3) and it works for me.