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ID kynurenine pathway in C gigas
Based on NCBI transcripts in this snail paper : https://d.pr/f/lz7GRE see if homologs are present in C. gigas. Should just be able to create multi-fasta and blast.
Do add link to snail multi-fasta here so can use in other species..
for later reference a few other papers : https://d.pr/f/Msnaxo
I'm getting ready to start in on this, but just wanted to post some info that's already in NCBI:
cgig-kynurenine-ncbi-dataset.csv
| Chromosome | Accession | Begin | End | Name | Symbol | Gene ID | Gene Type | Transcripts accession | Protein accession | Protein length |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NC_047559.1 | 34176953 | 34183179 | kynurenine--oxoglutarate transaminase 3-like | LOC105325286 | 105325286 | protein-coding | XM_011424787.3 | XP_011423089.2 | 423 |
| 1 | NC_047559.1 | 34185813 | 34191340 | kynurenine--oxoglutarate transaminase 3-like | LOC105325285 | 105325285 | protein-coding | XM_011424785.3 | XP_011423087.2 | 445 |
| 3 | NC_047561.1 | 7303437 | 7313822 | kynurenine 3-monooxygenase | LOC105326901 | 105326901 | protein-coding | XM_011427135.3 | XP_011425437.2 | 448 |
| 3 | NC_047561.1 | 16118245 | 16133504 | kynurenine 3-monooxygenase | LOC105346010 | 105346010 | protein-coding | XM_011454456.3 | XP_011452758.2 | 469 |
| 5 | NC_047563.1 | 6745429 | 6752411 | kynurenine formamidase | LOC105336362 | 105336362 | protein-coding | XM_011440661.3 | XP_011438963.2 | 312 |
| 7 | NC_047565.1 | 57348671 | 57358536 | kynurenine--oxoglutarate transaminase 3 isoform X1 | LOC105327675 | 105327675 | protein-coding | XM_020067008.2 | XP_019922567.2 | 464 |
| 10 | NC_047568.1 | 10067872 | 10080710 | kynurenine/alpha-aminoadipate aminotransferase, mitochondrial isoform X1 | LOC105325199 | 105325199 | protein-coding | XM_034456076.1 | XP_034311967.1 | 428 |