Compare top marker genes in oyster and geoduck scRNAseq data

[sr320]

[meganewing]

can you provide a bit more info on this please? or which oyster / geoduck data you're referring to

[sr320]

geoduck top marker genes: https://github.com/sr320/paper-geoduck-gene-exp/blob/main/data/geoduck_topmarkers_annot.txt

oyster top marker genes: https://docs.google.com/spreadsheets/d/1FwwQP7-bHOjVpJjQivAw2Clw2B71Vndr/edit#gid=598008114

[sr320]

@meganewing you mention you add results on this?

[meganewing]

whoops just saw this -- https://github.com/meganewing/oyster-geoduck-topmarkers/blob/main/output/top_marker_oyster_geoduck_common.csv

[sr320]

thanks- but looking for a url to a notebook post explaining what you did and the results.

[meganewing]

lot more brief than the rnaseq one since it was a lot less involved. https://meganewing.github.io/mewing-notebook/posts/2024-01/oyster_geoduck_topmarker.html