Loading sparse matrix or anndata object

[rfarouni]

Hi,

Is loading a sparse matrix or anndata object functionality in the works?

https://anndata.readthedocs.io/en/stable/

Thanks!

[luisaparicio]

Hi,

Thanks for your question. Unfortunately we do not have anndata objects in the current public version. However you can use the code and generate the anndata later, e.g.

adata_h = sc.AnnData(model.return_cleaned(sample_variance=1500))

if you want to use it together with tools like scanpy

Perhaps in the future we may add some of the features that you mention.

Feel free to ask more if you need, Luis

El lun., 18 may. 2020 a las 12:47, Rick Farouni ([email protected]) escribió:

Hi,

Is loading a sparse matrix or anndata object functionality in the works?

https://anndata.readthedocs.io/en/stable/

Thanks!

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-- Luis