rnacentral-webcode Label sequences that match Pfam domains

Example: a possible mRNA (resolvase) matches Pfam PF00589.20.

Oct 26 '16 11:10 AntonPetrov

There are about 1000 sequences, coming from the same publication, that are labeled as uncharacterized protein. Good group to test check for Pfam matches? http://rnacentral.org/search?q=pub_id:%22434545%22

Feb 02 '17 11:02 nataquinones

Great example, thank you Natalia!

I tried this sequence and this one using Pfam web search but it gave no domain, only a bunch of stop codons.

Looking at the ENA entries (example) where one of the sequences came from, it seems like the product is a protein, but the type is a putative ncRNA. Not sure what the authors meant.

I guess we will accumulate more examples like this and see what needs to be done.

Feb 02 '17 13:02 AntonPetrov