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RB##.fastq not found error
When analysing a pre-demultiplexed run where the fastq files are gzipped, ( *.fastq.gz ) the output will say something like
RB01.fastq not found .....
.gz fastq files not being detected is a small bug in the file detection in src/jobs.py
A fix has been made in the master branch. To patch your existing build, simply replace the src/jobs.py file with the latest in master.