deeplexicon
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Psy-Fer
Signal based nanopore RNA demultiplexing with convolutional neural networks
Hi! I am ghaving an error that I do not understand from deeplexicon.py. The output is empty. Could you please let me know what's going on and how to solve...
Hi James, we are unable to build deeplexicon GPU version on newer GPUs (codename Ampere: RTX3080Ti, A4000). This is because those GPUs require newer CUDA version (deeplexicon is built against...
Hey, thank you for developing this tool, very excited to use it. I wanted to run the following script on my fast5_pass files: `(Deeplexicon) beckmannlab-arch% python3 deeplexicon.py -p ~/"run/user/1005/gvfs/afp-volume:host=XXX.XX.XX.XX,user=stefan,volume=beckmannlab/stefan/Data (not...
Hi, Just wondering if you have trained any models on barcodes for RNA004? This would be super useful! Many thanks Oscar
I have been attempting to use the fast5 data provided with the manuscript to train a model to call the same 4 barcodes as "resnet20-final.h5". I've used mapping information to...
Dear Developers of DeePlexiCon, I just came across this github repo and the paper. I'd love to try using this approach to multiplex with your barcodes. However, I plan to...
Dear authors, I used multi-threading and I got only a few reads generated. While removing that option gives me no error. Also using -t 1 is generating an error. Thanks,...
hello I'm planning to multiplex my dRNA seq library referred to this article but in the issue tab, developer said this tool do not support RNA-004 library. is there any...
hello again..! i run the deeplexicon but error is occured... how can i solve this..? 