Project-MONAI
MD Express - Hello World - No dicom list printed with curl - MAPs not getting launched
This issue was previously raised #90, but the suggested solution does not apply/work for me.
In the hello world example, after sending DICOMS to MONAI-Deploy, there is this step in the Readme.md:
> docker container list -a | grep alpine
# locate the container ID and run the following command
> docker logs {CONTAINER ID}
# expect a list of files to be printed
/var/monai/input/1.2.826.0.1.3680043.2.1125.1.19616861412188316212577695277886020/1.2.826.0.1.3680043.2.1125.1.34918616334750294149839565085991567/1.2.826.0.1.3680043.2.1125.1.60545822758941849948931508930806372.dcm.json
/var/monai/input/1.2.826.0.1.3680043.2.1125.1.19616861412188316212577695277886020/1.2.826.0.1.3680043.2.1125.1.34918616334750294149839565085991567/1.2.826.0.1.3680043.2.1125.1.60545822758941849948931508930806372.dcm
But this is the output I am getting:
===Configuring Informatics Gateway===
Informatics Gateway IP Address = 172.29.0.50
Informatics Gateway Port = 5000
Informatics Gateway AE TItle = MONAI-DEPLOY
Orthanc IP Address = 172.29.0.100
Orthanc SCP Port = 4242
Deleting existing MONAI Deploy AE Title
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 233 0 233 0 0 749 0 --:--:-- --:--:-- --:--:-- 749
{
"name": "MONAI-DEPLOY",
"aeTitle": "MONAI-DEPLOY",
"grouping": "0020,000D",
"workflows": [],
"ignoredSopClasses": [],
"allowedSopClasses": [],
"timeout": 5,
"id": "0d450300-5010-4711-9277-2d126fb2b7ca",
"dateTimeCreated": "2023-09-29T18:20:57.431Z"
}
Deleting existing DICOM Source
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 151 0 151 0 0 2841 0 --:--:-- --:--:-- --:--:-- 2903
{
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "aa451300-ee23-4c60-bde3-45afae65c4b5",
"dateTimeCreated": "2023-09-29T18:20:57.713Z"
}
Deleting existing DICOM Destination
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 163 0 163 0 0 3664 0 --:--:-- --:--:-- --:--:-- 3704
{
"port": 4242,
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "5e2a2299-0cec-4fd4-b415-c892595647de",
"dateTimeCreated": "2023-09-29T18:20:57.771Z"
}
Adding MONAI Deploy AE Title
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 287 0 237 100 50 789 166 --:--:-- --:--:-- --:--:-- 956
{
"name": "MONAI-DEPLOY",
"aeTitle": "MONAI-DEPLOY",
"grouping": "0020,000D",
"workflows": [],
"ignoredSopClasses": [],
"allowedSopClasses": [],
"timeout": 5,
"id": "264fc41b-bf31-4da5-b007-ff97ebe05120",
"dateTimeCreated": "2023-09-29T19:46:06.5557054Z"
}
Adding DICOM Source
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 220 0 155 100 65 2893 1213 --:--:-- --:--:-- --:--:-- 4150
{
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "5a996e53-f217-4539-8733-293aeb947197",
"dateTimeCreated": "2023-09-29T19:46:06.8520296Z"
}
Adding DICOM Destination
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 245 0 167 100 78 3318 1549 --:--:-- --:--:-- --:--:-- 5000
{
"port": 4242,
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "9eb29248-5cd5-4762-af08-2ca420ba8f82",
"dateTimeCreated": "2023-09-29T19:46:06.9279751Z"
}
Listing DICOM Sources
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 153 0 153 0 0 5283 0 --:--:-- --:--:-- --:--:-- 5464
[
{
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "5a996e53-f217-4539-8733-293aeb947197",
"dateTimeCreated": "2023-09-29T19:46:06.852Z"
}
]
Listing DICOM Destinations
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 165 0 165 0 0 6224 0 --:--:-- --:--:-- --:--:-- 6346
[
{
"port": 4242,
"name": "ORTHANC",
"aeTitle": "ORTHANC",
"hostIp": "172.29.0.100",
"id": "9eb29248-5cd5-4762-af08-2ca420ba8f82",
"dateTimeCreated": "2023-09-29T19:46:06.927Z"
}
]
As discussed previously, this is the IGconfig container that is not active anymore. I am running this on a GPU server, so there is no NVIDIA container runtime issue. All my other containers show healthy status and the logs do not seem to show any obvious errors:
But, I think none of the MAP containers that are in the workflow definition are getting launched. I tried the Hello-world and Liver Tumor segmentation MAP - no segmentation output was received by ORTHANC, can someone help debug - please!
I am also experiencing this exact same error. The Informatics Gateway Config container is not active, and when I run the container in Docker Desktop, it will exit in less than 1 second. I have been trying to execute the Hello World and AI Liver Segmentation MAP examples.
I am able to upload the MONAI provided DICOM datasets to Orthanc, deploy workflow definitions for the alpine and AI Liver Segmentation MAP container images in the command line, and Send to DICOM Modality --> MONAI DEPLOY in Orthanc. The job indicates that it has run successfully in Orthanc - however, the job completes much faster than the 90 seconds indicated by the README (the example below completed in just under 10 seconds):
After the workflows complete, I get the same output as the comment above for the Hello World case. For the AI Liver Segmentation MAP case, executing docker container list -a | grep monai_ai_livertumor_seg_app does not recognize any Docker containers (Docker Desktop does not indicate this container is running). I would concur that it seems like the MAP container is not getting launched after the workflow is completed.
Happy to provide any relevant mdl container logs to help debug, thank you!
@bluna301 what version of MDE are you using? It would be great if you can attach docker compose logs. Thanks.
