DP_GP_cluster
DP_GP_cluster copied to clipboard
PrincetonUniversity
Im trying to install this package and get the following error: copying DP_GP/plot.py -> build/lib.macosx-10.6-x86_64-2.7/DP_GP copying DP_GP/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/DP_GP copying DP_GP/utils.py -> build/lib.macosx-10.6-x86_64-2.7/DP_GP running build_ext skipping 'DP_GP/core.c' Cython extension (up-to-date)...
While running the test: DP_GP_cluster.py -i test/test.txt -o test/test -p png -n 20 --plot I get the following error: ``` from DP_GP import core ImportError: cannot import name core ```...
Currently, the result has 100+ clusters. How to reduce this number? Thanks, Yichao
Traceback (most recent call last): File "/private/software/bin/DP_GP_cluster.py", line 475, in args.do_not_mean_center) File "DP_GP/core.pyx", line 90, in DP_GP.core.read_gene_expression_matrices (DP_GP/core.c:4266) TypeError: Cannot cast ufunc subtract output from dtype('float64') to dtype('int64') with casting...
Hello, I would like to ask if you could provide me the datasets with their respective targets. Thanks in advance.
--Hi, i have tried with this input file below with \t as field separator and it failed. gene 10 20 gene_1 NA 0.93 gene_2 NA 0.39 gene_3 NA -0.45 gene_4...
Hi, While installing, I am getting stuck with following error: ""error: command 'gcc' failed with exit status 1". Please see the attached file for details of error. ...
hello, I try to install your tool and i have this message in my terminal: running install running build running build_py running build_ext skipping 'DP_GP/core.c' Cython extension (up-to-date) building 'DP_GP.core'...
Hi, I was interested in trying out this clustering package. Does the input file handle multiple replicates per time points? Or is each column the mean of several replicates at...
Hello, I have DP_GP_cluster outputs. I'm specifically looking at the optimal_clustering.txt file, which gives me the cluster name and a list of all the gene accession IDs in that cluster....
