DeepSlice
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PolarBean
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Hello ! I'm trying to see if I can update some dependencies of abba_python (pyimagej, python version, etc.) but DeepSlice relies on tensorflow 1.15 and this seems to be the...
Now that Deepslice is available to PyPI, could you look into uploading it to conda-forge? I'm not sure how much work it would take to set up, but it would...
Hi, I'm trying to install DeepSlice using pip but am getting this specific error: "ERROR: Cannot install deepslice==1.0.0, deepslice==1.0.1, deepslice==1.0.11, deepslice==1.0.2, deepslice==1.0.3, deepslice==1.0.4, deepslice==1.0.5, deepslice==1.0.6, deepslice==1.1.0, deepslice==1.1.1, deepslice==1.1.2, deepslice==1.1.3, deepslice==1.1.4,...
Please add information required by HBP in the ReadMe. Structure the text like https://github.com/Neural-Systems-at-UIO/MeshView-for-Brain-Atlases#readme Authors are all persons that contributed to the sw. Suggestion to take same author list as...
https://github.com/PolarBean/DeepSlice/blob/main/DeepSlice/coord_post_processing/angle_methods.py#L108-L113 The issue is here where depths is not calculated if we use "mean" however it is referenced later on even though its not required
When I reach the step of saving the .xml file in the ReadMe (Model.save_predictions(folderpath + 'MyResults') , I get the following error message. Has anyone else experienced this or know...
I uploaded 68 images to DeepSlice Web and once it hits 25, it just gets stuck. If I press reload, I get an xml file with 1-25 and #68, but...
Thanks for make this convent tool. I wonder if Deepslice will support [Kim Atlas](https://kimlab.io/brain-map/atlas/) in the future.
Hello, I've used the web application to allign my brain slices. However, lately it won't follow through the process and will show an error message: "500 Internal Server Error: The...
