Lolipop with Mutant Allele Frequency instead of count

[bkohrn]

It would be useful if we could plot values other than count on the lollipop plot; in particular, we often find ourselves wanting to plot Mutant Allele Frequency. Ideally, this would be accomplished by giving a column name for the values to plot. I've managed to program a variation that works for plotting Mutant Allele Frequency from our .maf files, but I'm not sure how to make it more generally applicable.

[PoisonAlien]

Hi,

Is it possible to share a plot to demonstrate? I am guessing you would like to have VAF on the y-axis instead of frequency?

[haochenz96]

Thanks for the amazing tool!

Same request here. Would be great if the function could take a dataframe of unique SNV records and a column of custom "height" data (e.g. VAF, number of samples) and make the plot.

A good reference could be: which was taken from this package (https://bioconductor.org/packages/release/bioc/vignettes/trackViewer/inst/doc/lollipopPlot.html#Change_the_height_of_a_lollipop_plot)

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