StainTools
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Peter554
Tools for tissue image stain normalisation and augmentation in Python 3
``` /users/sli59/anaconda3/envs/torch_lester/lib/python3.7/site-packages/staintools/stain_normalizer.py:41: RuntimeWarning: divide by zero encountered in true_divide source_concentrations *= (self.maxC_target / maxC_source) /users/sli59/anaconda3/envs/torch_lester/lib/python3.7/site-packages/staintools/stain_normalizer.py:41: RuntimeWarning: invalid value encountered in multiply source_concentrations *= (self.maxC_target / maxC_source) Empty Tissue Mask multiprocessing.pool.RemoteTraceback:...
I want to use StainTools in the Kaggle notebook TPU platform. But it seems StainTools does not support tensor inputs and return an error.
Hi :)! I'm trying to use your tool to do color normalization of immunohistochemical stains (3 dyes, CD8, PanCk, and nucleus), but I am not getting good results. I was...
Hello! I'm using your code to normalize over 1.6 million patches, and find it's really time consuming. Do you have any plans to accelerate using GPUs?
Hello, I want to use multiple CPUs to accelerate the function. When I use your class in multiprocessing, the kernel just freezes, and it does not do anything. Can you...
i meet this error
I am running on anaconda py35 and getting this error with a large slide image. terminate called after throwing an instance of 'std::bad_array_new_length' what(): std::bad_array_new_length Aborted (core dumped) Reference Shape...
For anyone who has trouble with installing spam by pip, I used this command before installing: > sudo apt-get install libatlas-base-dev liblapack-dev libblas-dev The reference comes from the original spam...
