pyopenms_viz
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OpenMS
Streamlining Mass Spectrometry Data Visualization with Pandas
## Summary by CodeRabbit - Chores - Project version bumped to 1.0.1; Python support broadened and CI now tests multiple Python versions (recommended 3.13). Large dependency upgrades applied. - Documentation...
When viewing MS data, the output is not displayed properly, as shown below. I'd like to solve this problem - could you point out which part I should check? ...
feat(ChromatogramPlot): Add tile_by parameter for automated subplot creation - Introduced the `tile_by` parameter in ChromatogramPlot to split data into subplots automatically. - Eliminated the need for manual canvas specification by...
Currently, plotting across several axes in pyopenms_viz can be cumbersome. Some examples include: https://github.com/OpenMS/pyopenms_viz/blob/main/docs/gallery_scripts_template/plot_spyogenes_subplots_ms_matplotlib.py https://github.com/OpenMS/pyopenms_viz/blob/main/docs/gallery_scripts_template/plot_investigate_spectrum_binning_ms_matplotlib.py In both of these scripts, the `.plot` function must be called multiple times in a...
🔹 What This PR Fixes This PR fixes the issue where log scaling was incorrectly applied to both PeakMap colors and marginal plots. Now: Log scaling is applied only to...
## Pull Request description ### feat: Add Polars DataFrame support - Create DataFrame abstraction layer for pandas/polars compatibility - Update plotting backends to handle both DataFrame types - Add polars...
Sending the command on git bash "python docs/gallery_scripts_template/plot_spyogenes_subplots_ms_matplotlib.py" for example, where there should be a figure with 6 subplots, it shows the figure but only the first subplot is filled....
https://github.com/OpenMS/pyopenms_viz/pull/29 shows an implementation of how to add a sequence plot into the matplotlib plots. Unfortunately with the new updates to pyopenms_viz although this feature is highly useful for mass...
Hey @jcharkow ! This PR addresses issue #53 by integrating the feature to plot peptide sequences with matched fragments into the Matplotlib backend interface. I have followed your instructions from...
