scrnapip

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In dir.create(outdir, recursive = T) : cannot create dir '/scRNAtest', reason 'Permission denied'

9

您好，我把第1、2步设置为false，在目录下放了一个整合后的seurat对象rds文件，按视频运行代码，报错In dir.create(outdir, recursive = T) : cannot create dir '/scRNAtest', reason 'Permission denied'。这个是怎么回事呢？感谢！ 系统是 ubuntu 20.04和mac 14.2.1 Apple silicon m1 max [nohup.log](https://github.com/OpenGene/scrnapip/files/13737501/nohup.log

znxfdd

关于step3的报错

2

您好，在使用Rscript /home/bin/singlecell.r -i /mnt/d/scTEST/config.ini 命令后，出现以下报错。 请问该如何解决呢 2023-12-17 10:11:41 INFO::savefig at /mnt/d/outfile/step3/umap/plotby_ident 2023-12-17 10:11:43 INFO::savefig at /mnt/d/outfile/step3/umap/plotall_ident Error in `geom_point()`: ! Problem while computing aesthetics. ℹ Error occurred in the 1st...

kikokhalifa

配置文件（config.ini）有没有模板

2

你好，请问配置文件（config.ini）有没有模板？还是需要自己从头开始创建？如果能有幸被回答，十分感谢

Jxuanrui

Alternative entrypoint?

1

Hi, I don't use Cellranger since we have BD Rhapsody data which is not compatible. Is there a way to input the data into this tool after generating the count...

colindaven

docker容器有没有其他下载方式

1

在我运行命令 ``` docker pull zhangjing12/scrnapip ``` 遇到如下报错 ``` error pulling image configuration: download failed after attempts=6: dial tcp [2a03:2880:f12c:83:face:b00c:0:25de]:443: i/o timeout ``` 有无不使用docker pull就能将安装包安装到本地的方式

watermelontreesjs