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fastp trim polyG is not working when the data is large

Open MinBio opened this issue 2 years ago • 3 comments

I tested the same command with different two datasets, polyG still remains if the data is large (i tested 60M SE reads). polyG is still there and not be trimmed. fastp --in1 test_1.gz -g --poly_g_min_len=4 --out1 test_fp_1.gz

Any suggestions?

Thank you

MinBio avatar Feb 28 '23 03:02 MinBio

I confirm - polyG is not working.

onurcanbektas avatar Jan 27 '24 19:01 onurcanbektas

yeah, also for me is not working (version 0.23.4)

leone93 avatar May 14 '24 11:05 leone93