OpenGene.jl

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Throwing multiple errors while testing OpenGene package in Julia

1

loaded Package in Julia Version 1.0.4: (v1.0) pkg> add https://github.com/OpenGene/OpenGene.jl and it throws multiple errors while: (v1.0) pkg> test OpenGene ERROR: LoadError: LoadError: LoadError: LoadError: syntax: extra token "Sequence" after...

land-mine

Dear All. Thanks for your useful tools, Now I tried to Pkg.add OpenGene in julia 1.1.1, while the terminal report following errors: Updating registry at `~/.julia/registries/General` Updating git-repo `https://github.com/JuliaRegistries/General.git` Resolving...

Ginsea

don't override display

1

You are overloading `display` in order to customize output. This is the wrong way to do it — see the manual on [custom pretty printing](https://docs.julialang.org/en/release-0.6/manual/types/#Custom-pretty-printing-1). To customize REPL output, you...

stevengj

LoadError: UndefVarError: readall not defined

2

my julia version is 0.6.0 after type 'using OpenGene' Stacktrace: [1] include_from_node1(::String) at ./loading.jl:569 [2] include(::String) at ./sysimg.jl:14 [3] include_from_node1(::String) at ./loading.jl:569 [4] eval(::Module, ::Any) at ./boot.jl:235 [5] _require(::Symbol) at...

aqzas

sfchen

like Entrez

sfchen

hamming distance

1

In the function hamming_distance(s1,s2), len = min(length(s1), length(s2)), while Hamming distance are between two strings of equal length, see https://en.wikipedia.org/wiki/Hamming_distance

6Youcai

Consider contributing to BioJulia

1

Hi, OpenGene! OpenGene is heading towards covering much of the same territory as [BioJulia](https://github.com/BioJulia/Bio.jl). Rather than create a new package, would you consider contributing to BioJulia? We'd be very glad...

blahah