echopype

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to_netcdf failure in echopype_tour notebook under echopype-examples

16

Hi, I running the echopype_tour example in the echopype-examples repo. At panel 9 and line `ed.to_netcdf(save_path=converted_dpath, overwrite=True)` I get: `08:35:29 parsing file Summer2017-D20170728-T181619.raw, time of first ping: 2017-Jul-28 18:16:19 08:36:38...

erikatbeof

Issues with versioning in GitHub builds

8

After merging #799, portions of our tests are failing. After looking into the failing tests, I found that when we install echopype on our GitHub builds, we get this strange...

b-reyes

In PR #774 we added the option to directly write variables with a large memory footprint to a temporary zarr store. Ideally, we want to include the option `offload_to_zarr='auto'`, which...

b-reyes

Allow handling larger-than-memory total data volume in `combine_echodata`

2

In one of our `echopype-examples` example notebooks (the OOI one), the kernel would die if local memory is not large enough to hold the total volume of data from all...

leewujung

`combine_echodata` review and debug

1

This serves as the tracking issue for all existing issues related to `combine_echodata`: - [ ] #678 - [ ] #704 - [x] #705 - [ ] #766 My thought...

leewujung

Create default artificial test objects/datasets

1

Increasingly we have the need to unit test functionalities that are higher on the processing chain and many of the current tests right now need to go through the convert-->calibrate...

leewujung

Improve and add documentation for `_clean_ping_time`

6

In PR #297 we created the function [_clean_ping_time](https://github.com/OSOceanAcoustics/echopype/blob/828587df6f49c6b7e49cef6d4af9246fc2e0be19/echopype/qc/api.py#L4), but did not include documentation. This function involves a recursive call, so it is not apparent what is happening. After discussing this...

b-reyes

I am trying to run through the [OOI EK60 Mooring Example](https://github.com/OSOceanAcoustics/echopype-examples/blob/main/notebooks/ms_OOI_EK60_mooringtimeseries.ipynb) and have received an error `"WindowsPath" object is not iterable` when running the line `ds_Sv = ep.calibrate.compute_Sv(ed)` in the...

IanTBlack

In PR #794, it was found that RAW4 datagrams are not being correctly handled in the parsed to zarr (P2Z) method introduced in PR #774. The issue was discovered after...

b-reyes

Errors/issues processing sequentially pinged multifrequency broadband EK80 files

7

Hi all. I didn't see this in either of the current open or closed issues, but I am running into a data processing issue with Simrad *.raw files containing broadband...

brandynlucca