scriptcwl

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The current code is incompatible with the latest version of cwltool.

dsmits

Wildcard/regex input filename argument handling example ?

1

Hi, I have the following command line I wish to use scriptcwl to generate a CWL file myprogram -i /somepath/*.exr Is there any example code I can refer to which...

nyue

cwldep is a tool that helps you to import tools and workflows from other sources for use in your own workflow. https://github.com/common-workflow-language/cwldep

jvdzwaan

jvdzwaan

Copied from https://github.com/nlppln/nlppln/issues/31 > When adding inputs, it would be nice if there was a list of CWL types available in nlppln, so that I could use tab-completion when entering...

jvdzwaan

Add documentation about running cwltool from jupyter notebooks

1

Workflows can be run from jupyter notebooks using: ``` %%bash cwltool /home/jvdzwaan/cwl-working-dir/add_multiply_example_workflow.cwl --num1 2 --num2 3 ```

jvdzwaan

parse commandline flags/options when validating workflow

2

I have a workflow that uses a cwl-extension which is not part of the standard. I'd like to be able to parse the "--enable-ext" flag to cwltool when validating the...

SpheMakh

Add workflow input with CommandInputEnumSchema

1

Add workflow input with [CommandInputEnumSchema](http://www.commonwl.org/v1.0/CommandLineTool.html#CommandInputEnumSchema).

jvdzwaan

scriptcwl was created with transparency and readability in mind. Scripts to generate cwl workflow specifications are transparent (e.g, workflow inputs and outputs have to be added explicitly) and readable (if...

jvdzwaan

First load tools, then workflows to prevent warnings

1

When using the working_dir option. If a workflow is copied before all of its steps, warnings are issued, because not all files used in the `run` field can be found....

jvdzwaan