Question abunt the output of dRep

[quliping]

dRep is a good software and very useful in my research. However, I have some problems. The docs of dRep said a figure named 'Cluster_scoring.pdf' will be produced under the folder 'figures' in the output dir. However, I didn't found this figure in my output dir. No warnning was produced by dRep. By the way, the file 'Winning_genomes.pdf' wa also could not be opened.

I also have the other question. this two genomes have ANI lower than the threshold 95%, and both of them was markered as represent genome, but why they have the same leaf color? Maybe they should in different colors?

[MrOlm]

Hi @quliping -

Thanks for the kind words about dRep. To figure out why the figures aren't working, please 1) make sure you're using the most up-to-date version of dRep, and 2) run with -d, which will tell you the error as to why the figures aren't working.

That's also a good point about the colors- I agree that in this circumstance they should be different colors. I'm not sure what caused that problem; let me know if it persists for you (it could be that those are different colors, they're just very very similar)

Best, Matt