SLiM
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MesserLab
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platfor...
This discussion: https://groups.google.com/g/slim-discuss/c/TE41yIdsSKw/m/kPecxkC2AQAJ?utm_medium=email&utm_source=footer makes me think that a helper method would be useful in this area. This is not the first time this has come up; people want to be...
When using the nucleotide-based models on real genomes (i.e. those imported from fasta files), it is difficult to add genes and exons manually, but this information is easily accessible with...
This pull request is for ongoing work on parallelization of tree-sequence simplification. It is based on the conceptual approach pioneered by @molpopgen, and the tskit-based PR by @jeromekelleher at https://github.com/tskit-dev/tskit/pull/2665.
Hi SLiM team! I've been thinking about dispersal as a quantitative trait. It would be a nice feature to vectorize the parameters of the kernels in newer methods like `sampleNearbyPoint`,...
Okay, I don't *have* windows, but in trying to get Windows CI tests for stdpopsim working, I came across this error: ``` E #ERROR (Eidos_WriteToFile): could not write to file...
Over in [`Eidos_AbsolutePath( )`](https://github.com/MesserLab/SLiM/blob/4bcc36a02aeacdc9ee808e38d62836f854246502/eidos/eidos_globals.cpp#L2268), if it figures out it's got an relative path, it (a) checks whether the end of the `current_dir` is a `/` and if not, appends a...
I'm no expert, but I think this would solve #438 I tested it by doing: 1. Generate build system ```bash cd SLiM mkdir build cd build cmake .. ``` 2....
Seems like a lot of people want to be able to do this; it's an FAQ on slim-discuss. It can be done with `killIndividuals()` or similar techniques, but it'd be...
Over in https://github.com/tskit-dev/pyslim/issues/343 we ran into the following issue. Consider this script: ``` initialize() { setSeed(123); defineConstant("param_set_id", 1); defineConstant("NAnc", 17147); defineConstant("mAncNS", 0); defineConstant("NAncS", 411); defineConstant("NAncN", 209); // ----- TIME PARAMETERS...
RHEL 8 uses the _binutils_ package version _2.30-123.el8_. The version of `ld`, the GNU linker, provided by this package is unable to resolve a conflict between the names of compiled...
