SplitThreader

SplitThreader is an interactive web application for analysis of rearrangements in a cancer genome.

SplitThreader is available online at http://splitthreader.com.

Screenshots:

Local deployment

If you need to deploy SplitThreader locally, here are the steps:

1. Install XAMPP on your computer (includes Apache and PHP)

2. Using the Terminal, go to the htdocs folder created during the install. On a Mac, the folder is located at /Applications/XAMPP/htdocs/

   cd /Applications/XAMPP/htdocs/
   

3. Clone this repository into the htdocs folder

   git clone https://github.com/marianattestad/splitthreader
   

4. Open up permissions for user_data and user_uploads so new files can be created in those directories

   chmod 777 user_uploads
   chmod 777 user_data
   

5. Then go to a web browser such as Chrome, Firefox, or Safari (Not tested on IE) and type into the url box:

   localhost/splitthreader
   

6. You may have to change the Python path for apache in order to be able to run SplitThreader