Assemblytics

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I upload a delta file, I get the error message "No file uploaded."

1

Hello， I upload a delta file, I get the error message "No file uploaded." Is there any problem with server ? Waiting for your reply. Thanks Mountain Gu

ITGMT

Hello! When I run nucmer step, I used the parameter：nucmer --mum -c 90 -l 40 ref.fa contig.fa. Then I filter the alignments with delta-filter -1 -q -r. The parameter I...

qingyun-mei

Add contig and scaffold name for ordered

thdurand4

Hello, For get high quality SVs, I first aligned the target genome to the ref genome ,then I mapped the ref genome to target genome. I filtered the SVs by...

rillaxy

Issue with coordinates of variants

1

Hello, thanks for the great tool and for your support. I have aligned 2 (not scaffolded) assemblies of Phaseolus vulgaris (about 500 Mb) with minimap2 using this command: minimap2 --MD...

MartuGio

Server not available

2

The http://assemblytics.com/ web throws the following error: 503 Service Unavailable No server is available to handle this request.

anleopa

Bed file coordinate system

2

Hi, I have started using Assemblytics lately and I am trying to understand the .bed file coordinates. Are they the standard 0-based half open? Agnieszka

agolicz

R and Python versions

1

Hi, Could you please provide the versions of R and python used and of the below dependency packages R ggplot2 plyr RColorBrewer scales Python argparse numpy I see an error...

shabirmoosa

Assemblytics for bacterial genome

1

Can Assemblytics be used to call structural variants from de novo assembly of bacterial genomes?

rthapa1

Failed file upload - Is the Assemblytics server down?

5

Any time I upload a delta file, I get the error message "No file uploaded." I was worried some weird alignments in my .delta file could've caused this, so I...

Neato-Nick