biojupies icon indicating copy to clipboard operation
biojupies copied to clipboard

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Results 92 biojupies issues
Sort by recently updated
recently updated
newest added

Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.3.1 to 6.5.1. Release notes Sourced from nbconvert's releases. Release 6.5.1 No release notes provided. 6.5.0 What's Changed Drop dependency on testpath. by @​anntzer in jupyter/nbconvert#1723 Adopt...

dependencies

Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.3.1 to 6.5.1. Release notes Sourced from nbconvert's releases. Release 6.5.1 No release notes provided. 6.5.0 What's Changed Drop dependency on testpath. by @​anntzer in jupyter/nbconvert#1723 Adopt...

dependencies

I'm using the published data by Gtex but it isn't generating the notebook, it only appears the message "To continue, please select one of the options below" but there isn't...

Bumps [mistune](https://github.com/lepture/mistune) from 0.8.3 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...

dependencies

Bumps [mistune](https://github.com/lepture/mistune) from 0.8.3 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...

dependencies

Bumps [lxml](https://github.com/lxml/lxml) from 4.5.0 to 4.9.1. Changelog Sourced from lxml's changelog. 4.9.1 (2022-07-01) Bugs fixed A crash was resolved when using iterwalk() (or canonicalize()) after parsing certain incorrect input. Note...

dependencies

Hello, thank you for the tool! I am trying to run biojupies for a dataset with 120 samples with 18.7 MB . When I try to run the notebook, it...

Bumps [numpy](https://github.com/numpy/numpy) from 1.14.2 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependencies

Bumps [numpy](https://github.com/numpy/numpy) from 1.18.4 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependencies

Bumps [numpy](https://github.com/numpy/numpy) from 1.14.2 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependencies