FIDDLE
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MLD3
FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139
Team, Fiddle pipeline is amazing!!! I have been able to run it without any difficulties. I am trying to predict Sepsis, and wondering if anyone used Fiddle pipeline for calculating...
I am not using MIMIC-III or eicu data, and since this pipeline should e applicable to other EHR data sets, I am using it for in-house EHR data. No matter...
Hello, I am trying to replicate the results from the paper and I am stuck at getting the features for the time-variant variables. I run the following and I get...
I'm having an issue mapping data between institutions when one dataset has a subset of variables in the second dataset. I run the first dataset through FIDDLE I get a...
I was trying out the demo of FIDDLE using Google Colab (http://tiny.cc/get_FIDDLE) as well as locally. While running the preprocessing step using the provided data I encountered following error. I...
the df_time_series.joblib dataframe has the correct timing of when hierarchical variables (user-defined and ICD 10) are present, however, the output X.npz just has a 1.0 value for every hierarchical variable...
I am running FIDDLE on data extracted from MIMIC-III using the pipeline outlined in [FIDDLE-experiments](https://github.com/MLD3/FIDDLE-experiments/tree/master/mimic3_experiments). I have my population of ICU stays and am running FIDDLE with these parameters: --T=240.0...
The bug occurs when processing columns in the input DataFrame that contain a mix of numeric and non-numeric values. The relevant code is: ``` for col in df.columns: col_data =...
