tractseg bundle segmentation crops image

Open pmn1113 opened this issue 3 years ago • 1 comments

Hi,

I am trying to process raw diffusion data to get approximate bundle segmentations with TractSeg. My data has dimensions of 80 x 128 x 128 x 148 and voxel size of 2x2x2. I run this command:

TractSeg -i dwis.nii -o tractseg_output --raw_diffusion_input --preprocess

My output segmentation files get cropped to 80 x 128 x 127 for some subjects, but not others. Any reason why this might be happening?

Jun 02 '22 16:06 pmn1113

This is strange. Does it also happen if you do not use the option --preprocess ?

Jun 07 '22 14:06 wasserth