TractSeg Problems are encountered with TractSeg

fuying@fuying-System-Product-Name:~$ TractSeg Traceback (most recent call last): File "/home/fuying/miniconda3/bin/TractSeg", line 20, in from tractseg.libs import plot_utils File "/home/fuying/miniconda3/lib/python3.7/site-packages/tractseg/libs/plot_utils.py", line 22, in from tractseg.libs import fiber_utils File "/home/fuying/miniconda3/lib/python3.7/site-packages/tractseg/libs/fiber_utils.py", line 10, in from dipy.tracking.streamline import compress_streamlines as compress_streamlines_dipy ImportError: cannot import name 'compress_streamlines' from 'dipy.tracking.streamline' (/home/fuying/miniconda3/lib/python3.7/site-packages/dipy/tracking/streamline.py)

Apr 08 '22 13:04 Monitoryang

I am trying to use TractSeg on Ubuntu18.04. And I Install python3.7 and MRtrix3 using miniconda3, but encounter the above problems. How can I solve this problem? Thank you for receiving your reply.

Apr 08 '22 13:04 Monitoryang

You can either manually install an older version of dipy or you install the latest master of TractSeg which solves this issue:

pip install https://github.com/MIC-DKFZ/TractSeg/archive/master.zip

Apr 11 '22 17:04 wasserth

You can either manually install an older version of dipy or you install the latest master of TractSeg which solves this issue:
pip install https://github.com/MIC-DKFZ/TractSeg/archive/master.zip

Thank you for your reply. I installed an older version of dipy which solved the problem.

Apr 13 '22 10:04 Monitoryang