DNABERT_S
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[ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
Hi! DNABERT_S is a great model and I've been having fun working with it! I have been rerunning some of the code and found that, during the training of the...
The error seems not break my code running, but it disrupt me to read results. ``` huggingface/tokenizers: The current process just got forked, after parallelism has already been used. Disabling...
Hello team, Thank you for your excellent work. In the evaluation section, you show how to evaluate the model on the data you propose. But if I train the base...
Hi, I found that there exist several errors in the pre-training code (the file run.sh) and corresponding code. I have mentioned one in the pull request.Furthermore, it seems that we...
Hi, I found that the name of files containing downloaded model is incorrect, and I have fixed the problem in readme file: It should be all in the upper form....
Hi, I tried your model with customized datasets using chloroplast genomes in exactly the same format documented, but by checking the log information, here is what I found:  When...
I've been using this embedding tool for nearly a year now and really appreciate it. Do you have a more lightweight version that is faster as for large datasets, this...