pyvipr
pyvipr copied to clipboard
LoLab-MSM
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
Hey there, following the the example found on https://pyvipr.readthedocs.io/en/latest/tellurium_examples.html ``` import tellurium as te import pyvipr.tellurium_viz as tviz r = te.loada(""" J1:S1 -> S2; k1*S1; J2:S2 -> S3; k2*S2; J3:S4...
Hi, This is just a heads up for the following `jupyter labextension install` deprecation warning I got when adding pyvipr to JupyterLab 4.0.1: > (Deprecated) Installing extensions with the jupyter...
Bumps [style-loader](https://github.com/webpack-contrib/style-loader) from 3.1.0 to 3.3.2. Release notes Sourced from style-loader's releases. v3.3.2 3.3.2 (2023-03-13) Bug Fixes noop in environment without DOM API (#597) (03d3df3) v3.3.1 3.3.1 (2021-10-21) Bug Fixes...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Bumps [webpack](https://github.com/webpack/webpack) from 5.41.0 to 5.76.1. Release notes Sourced from webpack's releases. v5.76.1 Fixed Added assert/strict built-in to NodeTargetPlugin Revert Improve performance of hashRegExp lookup by @ryanwilsonperkin in webpack/webpack#16759 v5.76.0...
Bumps [minimist](https://github.com/minimistjs/minimist) from 1.2.5 to 1.2.8. Changelog Sourced from minimist's changelog. v1.2.8 - 2023-02-09 Merged [Fix] Fix long option followed by single dash [#17](https://github.com/minimistjs/minimist/issues/17) [Tests] Remove duplicate test [#12](https://github.com/minimistjs/minimist/issues/12) [Fix]...
Removes [cacheable-request](https://github.com/jaredwray/cacheable-request). It's no longer used after updating ancestor dependency [@jupyterlab/builder](https://github.com/jupyterlab/jupyterlab). These dependencies need to be updated together. Removes `cacheable-request` Updates `@jupyterlab/builder` from 3.3.2 to 3.6.1 Release notes Sourced from...
Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1. Commits 2449650 Update mocha 560b2d8 Don't use regex to trim whitespace b1bdb92 Remove linting package zoo c20dc7e Cache 308 See full diff in compare...
Bumps [jsonwebtoken](https://github.com/auth0/node-jsonwebtoken) and [verdaccio](https://github.com/verdaccio/verdaccio). These dependencies needed to be updated together. Updates `jsonwebtoken` from 8.5.1 to 9.0.0 Changelog Sourced from jsonwebtoken's changelog. 9.0.0 - 2022-12-21 Breaking changes: See Migration from...
Bumps [json5](https://github.com/json5/json5) from 1.0.1 to 1.0.2. Release notes Sourced from json5's releases. v1.0.2 Fix: Properties with the name __proto__ are added to objects and arrays. (#199) This also fixes a...
Bumps [express](https://github.com/expressjs/express) and [verdaccio](https://github.com/verdaccio/verdaccio). These dependencies needed to be updated together. Updates `express` from 4.17.2 to 4.18.2 Release notes Sourced from express's releases. 4.18.2 Fix regression routing a large stack...