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--score 'all' leads to improper bedgraph generation with --bgscore 'True'

Open EvanTarbell opened this issue 5 years ago • 1 comments

Just commenting to report a possible bug. As you mentioned the peak file is not generated properly when the --score parameter is set to 'all' but the bedgraph should work fine. I ran the command with --score set to 'all' and the bedgraphs generated for all samples had less than 10 lines so this option probably also interferes with the bedgraph generation. Setting the --score parameter to zscore solved the issue and produced complete bedgraphs.

Originally posted by @nyuhic in https://github.com/LiuLabUB/HMMRATAC/issues/64#issuecomment-653111972

EvanTarbell avatar Jul 02 '20 16:07 EvanTarbell

Related issue to #52

EvanTarbell avatar Jul 02 '20 17:07 EvanTarbell