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Ionic conditions correction

Open palakpsheth opened this issue 3 years ago • 3 comments

Hello,

Any plans to include oligomer corrections for ionic conditions (Na+ and Mg++), similar to mFold?

Thanks!

palakpsheth avatar Feb 07 '23 03:02 palakpsheth

Hello,

Any plans to include oligomer corrections for ionic conditions (Na+ and Mg++), similar to mFold?

Thanks!

I have a seqfold Julia fork, where I fixed several bugs in tm and also introduced ion concentration control.

I also added instructions for calling Julia code from Python via juliacall to the README.

phlaster avatar Sep 04 '25 20:09 phlaster

Undocumented bugs in melting temperature calculations;

They're not documented.. because we don't know about them, could you please make a separate issue for those?

That said that project looks awesome! The perf improvements are great to see

jjti avatar Sep 04 '25 22:09 jjti

Undocumented bugs in melting temperature calculations;

They're not documented.. because we don't know about them, could you please make a separate issue for those?

That said that project looks awesome! The perf improvements are great to see

Sorry for not reporting them asap. Opened #25

phlaster avatar Sep 04 '25 22:09 phlaster